Sadreyev, Ruslan I.: search on Z-Library

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1

Analysis of Blood and Fecal Microbiome Profile in Patients with Celiac Disease

Serena, Gloria, Davies, Camron, Cetinbas, Murat, Sadreyev, Ruslan I., Fasano, Alessio

Journal:

Human Microbiome Journal

Year:

2019

Language:

english

File:

PDF, 1.41 MB

english, 2019

2

New and Preliminary Evidence on Altered Oral and Gut Microbiota in Individuals with Autism Spectrum Disorder (ASD): Implications for ASD Diagnosis and Subtyping Based on Microbial Biomarkers

Kong, Xuejun, Liu, Jun, Cetinbas, Murat, Sadreyev, Ruslan, Koh, Madelyn, Huang, Hui, Adeseye, Adetaye, He, Puhan, Zhu, Junli, Russell, Hugh, Hobbie, Clara, Liu, Kevi, Onderdonk, Andrew B.

Journal:

Year:

2019

Language:

english

File:

PDF, 2.87 MB

english, 2019

3

TREM2 Acts Downstream of CD33 in Modulating Microglial Pathology in Alzheimer’s Disease

Griciuc, Ana, Patel, Shaun, Federico, Anthony N., Choi, Se Hoon, Innes, Brendan J., Oram, Mary K., Cereghetti, Gea, McGinty, Danielle, Anselmo, Anthony, Sadreyev, Ruslan I., Hickman, Suzanne E., El Kh

Journal:

Year:

2019

Language:

english

File:

PDF, 6.20 MB

english, 2019

4

RNA-seq: Basic Bioinformatics Analysis

Ji, Fei, Sadreyev, Ruslan I.

Journal:

Current Protocols in Molecular Biology

Year:

2018

Language:

english

File:

PDF, 400 KB

english, 2018

5

Single‐Cell RNA‐seq: Introduction to Bioinformatics Analysis

Ji, Fei, Sadreyev, Ruslan I.

Journal:

Current Protocols in Molecular Biology

Year:

2019

Language:

english

File:

PDF, 1.81 MB

english, 2019

6

ATRX Directs Binding of PRC2 to Xist RNA and Polycomb Targets

Sarma, Kavitha, Cifuentes-Rojas, Catherine, Ergun, Ayla, del Rosario, Amanda, Jeon, Yesu, White, Forest, Sadreyev, Ruslan, Lee, Jeannie T.

Journal:

Year:

2015

Language:

english

File:

PDF, 422 KB

english, 2015

7

Phenotypic and Genotypic Analyses of Genetic Skin Disease through the Online Mendelian Inheritance in Man (OMIM) Database

Sadreyev, Ruslan I, Murray, Mitzi L, Feramisco, Jamison D, Grishin, Nick V, Tsao, Hensin

Journal:

The Journal of Investigative Dermatology

Year:

2009

Language:

english

File:

PDF, 1.39 MB

english, 2009

8

ATRX Directs Binding of PRC2 to Xist RNA and Polycomb Targets

Sarma, Kavitha, Cifuentes-Rojas, Catherine, Ergun, Ayla, del Rosario, Amanda, Jeon, Yesu, White, Forest, Sadreyev, Ruslan, Lee, Jeannie T.

Journal:

Year:

2014

Language:

english

File:

PDF, 266 KB

english, 2014

9

Mitochondrial Dysfunction in C. elegans Activates Mitochondrial Relocalization and Nuclear Hormone Receptor-Dependent Detoxification Genes

Mao, Kai, Ji, Fei, Breen, Peter, Sewell, Aileen, Han, Min, Sadreyev, Ruslan, Ruvkun, Gary

Journal:

Cell Metabolism

Year:

2019

Language:

english

File:

PDF, 2.51 MB

english, 2019

10

ATRX Directs Binding of PRC2 to Xist RNA and Polycomb Targets

Sarma, Kavitha, Cifuentes-Rojas, Catherine, Ergun, Ayla, del Rosario, Amanda, Jeon, Yesu, White, Forest, Sadreyev, Ruslan, Lee, Jeannie T.

Journal:

Year:

2014

Language:

english

File:

PDF, 4.92 MB

english, 2014

11

Xist RNA Is a Potent Suppressor of Hematologic Cancer in Mice

Yildirim, Eda, Kirby, James E., Brown, Diane E., Mercier, Francois E., Sadreyev, Ruslan I., Scadden, David T., Lee, Jeannie T.

Journal:

Year:

2013

Language:

english

File:

PDF, 6.83 MB

english, 2013

12

COG4849 is a novel family of nucleotidyltransferases

Bong-Hyun Kim, Ruslan Sadreyev, Nick V. Grishin

Journal:

Journal of Molecular Recognition

Year:

2005

Language:

english

File:

PDF, 4.15 MB

english, 2005

13

Mutant GNAS drives pancreatic tumourigenesis by inducing PKA-mediated SIK suppression and reprogramming lipid metabolism

Patra, Krushna C., Kato, Yasutaka, Mizukami, Yusuke, Widholz, Sebastian, Boukhali, Myriam, Revenco, Iulia, Grossman, Elizabeth A., Ji, Fei, Sadreyev, Ruslan I., Liss, Andrew S., Screaton, Robert A., S

Journal:

Nature Cell Biology

Year:

2018

Language:

english

File:

PDF, 4.22 MB

english, 2018

14

348 MULTI-âOMICS PROFILING IN PATIENTS WITH QUIESCENT INFLAMMATORY BOWEL DISEASE IDENTIFIES BIOMARKERS PREDICTING RELAPSE

Borren, Nynke Z., Plichta, Damian, Joshi, Amit D., Bonilla, Gracia, Sadreyev, Ruslan I., Vlamakis, Hera, Xavier, Ramnik, Ananthakrishnan, Ashwin

Journal:

Gastroenterology

Year:

2020

File:

PDF, 702 KB

2020

15

Structure prediction for CASP8 with all-atom refinement using Rosetta

Srivatsan Raman, Robert Vernon, James Thompson, Michael Tyka, Ruslan Sadreyev, Jimin Pei, David Kim, Elizabeth Kellogg, Frank DiMaio, Oliver Lange, Lisa Kinch, Will Sheffler, Bong-Hyun Kim, Rhiju Das,

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 500 KB

english, 2009

16

Robust interferon signature and suppressed tissue repair gene expression in synovial tissue from patients with post-infectious, Borrelia burgdorferi -induced Lyme arthritis

Lochhead, Robert B., Arvikar, Sheila L., Aversa, John M., Sadreyev, Ruslan I., Strle, Klemen, Steere, Allen C.

Journal:

Cellular Microbiology

Year:

2018

Language:

english

File:

PDF, 1.89 MB

english, 2018

17

Interferon‐gamma production in Lyme arthritis synovial tissue promotes differentiation of fibroblast‐like synoviocytes into immune effector cells

Lochhead, Robert B., Ordoñez, David, Arvikar, Sheila L., Aversa, John M., Oh, Luke S., Heyworth, Benton, Sadreyev, Ruslan, Steere, Allen C., Strle, Klemen

Journal:

Cellular Microbiology

Year:

2018

Language:

english

File:

PDF, 2.00 MB

english, 2018

18

Distinct functions of tissue-resident and circulating memory Th2 cells in allergic airway disease

Rahimi, Rod A., Nepal, Keshav, Cetinbas, Murat, Sadreyev, Ruslan I., Luster, Andrew D.

Journal:

Journal of Experimental Medicine

Year:

2020

File:

PDF, 4.73 MB

2020

19

Molecular Signatures of Human Induced Pluripotent Stem Cells Highlight Sex Differences and Cancer Genes

Montserrat C. Anguera, Ruslan Sadreyev, Zhaoqing Zhang, Attila Szanto, Bernhard Payer, Steven D. Sheridan, Showming Kwok, Stephen J. Haggarty, Mriganka Sur, Jason Alvarez, Alexander Gimelbrant, Maisam

Journal:

Year:

2012

Language:

english

File:

PDF, 3.11 MB

english, 2012

20

The lysine demethylase KDM4A controls the cell-cycle expression of replicative canonical histone genes

Van Rechem, Capucine, Ji, Fei, Mishra, Sweta, Chakraborty, Damayanti, Murphy, Sedona E., Dillingham, Megan E., Sadreyev, Ruslan I., Whetstine, Johnathan R.

Journal:

Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms

Year:

2020

File:

PDF, 3.50 MB

2020

21

Single-cell imaging of normal and malignant cell engraftment into optically clear prkdc -null SCID zebrafish

Moore, John C., Tang, Qin, Yordán, Nora Torres, Moore, Finola E., Garcia, Elaine G., Lobbardi, Riadh, Ramakrishnan, Ashwin, Marvin, Dieuwke L., Anselmo, Anthony, Sadreyev, Ruslan I., Langenau, David M

Journal:

Journal of Experimental Medicine

Year:

2016

Language:

english

File:

PDF, 2.62 MB

english, 2016

22

A Specialized Mechanism of Translation Mediated by FXR1a-Associated MicroRNP in Cellular Quiescence

Bukhari, Syed I.A., Truesdell, Samuel S., Lee, Sooncheol, Kollu, Swapna, Classon, Anthony, Boukhali, Myriam, Jain, Esha, Mortensen, Richard D., Yanagiya, Akiko, Sadreyev, Ruslan I., Haas, Wilhelm, Vas

Journal:

Year:

2016

Language:

english

File:

PDF, 3.49 MB

english, 2016

23

Phf8 loss confers resistance to depression-like and anxiety-like behaviors in mice

Walsh, Ryan M., Shen, Erica Y., Bagot, Rosemary C., Anselmo, Anthony, Jiang, Yan, Javidfar, Behnam, Wojtkiewicz, Gregory J., Cloutier, Jennifer, Chen, John W., Sadreyev, Ruslan, Nestler, Eric J., Akba

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 1.63 MB

english, 2017

24

Sa1739 – Using the Zonulin Transgenic Mouse Model to Understand the Interplay Between Gut Permeability, Immune System, and Microbiota in the Context of Gut Inflammatory Diseases

Miranda-Ribera, Alba, Ennamorati, Maria T., Serena, Gloria, Jain, Nitya, Lan, Jinggang, Sadreyev, Ruslan I., Cetinbas, Murat, Fasano, Alessio, Fiorentino, Maria R.

Journal:

Gastroenterology

Year:

2019

Language:

english

File:

PDF, 488 KB

english, 2019

25

S-phase Enriched Non-coding RNAs Regulate Gene Expression and Cell Cycle Progression

Yildirim, Ozlem, Izgu, Enver C., Damle, Manashree, Chalei, Vladislava, Ji, Fei, Sadreyev, Ruslan I., Szostak, Jack W., Kingston, Robert E.

Journal:

Year:

2020

File:

PDF, 4.21 MB

2020

26

Survival in Quiescence Requires the Euchromatic Deployment of Clr4/SUV39H by Argonaute-Associated Small RNAs

Joh, Richard I., Khanduja, Jasbeer S., Calvo, Isabel A., Mistry, Meeta, Palmieri, Christina M., Savol, Andrej J., Ho Sui, Shannan J., Sadreyev, Ruslan I., Aryee, Martin J., Motamedi, Mo

Journal:

Year:

2016

Language:

english

File:

PDF, 3.86 MB

english, 2016

27

Widespread changes in nucleosome accessibility without changes in nucleosome occupancy during a rapid transcriptional induction

Mueller, Britta, Mieczkowski, Jakub, Kundu, Sharmistha, Wang, Peggy, Sadreyev, Ruslan, Tolstorukov, Michael Y., Kingston, Robert E.

Journal:

Genes & Development

Year:

2017

Language:

english

File:

PDF, 1.83 MB

english, 2017

28

Polycomb Repressive Complex 1 Generates Discrete Compacted Domains that Change during Differentiation

Kundu, Sharmistha, Ji, Fei, Sunwoo, Hongjae, Jain, Gaurav, Lee, Jeannie T., Sadreyev, Ruslan I., Dekker, Job, Kingston, Robert E.

Journal:

Year:

2017

Language:

english

File:

PDF, 8.59 MB

english, 2017

29

Mapping global and local co-evolution across 600 species to identify novel homologous recombination repair genes

Sherill-Rofe, Dana, Rahat, Dolev, Findlay, Steven, Mellul, Anna, Guberman, Irene, Braun, Maya, Bloch, Idit, Lalezri, Alon, Samiei, Arash, Sadreyev, Ruslan, Goldberg, Michal, Orthwein, Alexandre, Zick,

Journal:

Genome Research

Year:

2019

File:

PDF, 1.12 MB

2019

30

TREM2 Acts Downstream of CD33 in Modulating Microglial Pathology in Alzheimer’s Disease

Griciuc, Ana, Patel, Shaun, Federico, Anthony N., Choi, Se Hoon, Innes, Brendan J., Oram, Mary K., Cereghetti, Gea, McGinty, Danielle, Anselmo, Anthony, Sadreyev, Ruslan I., Hickman, Suzanne E., El Kh

Journal:

Year:

2019

File:

PDF, 6.20 MB

2019

31

Differential Plasma Protein Regulation and Statin Effects in HIV-infected and Non-HIV-infected Patients Utilizing a Proteomics Approach Protein Regulation and Statin Effects in HIV

deFilippi, Chris, Toribio, Mabel, Wong, Lai Ping, Sadreyev, Ruslan, Grundberg, Ida, Fitch, Kathleen V, Zanni, Markella V, Lo, Janet, Sponseller, Craig A, Sprecher, Emmett, Rashidi, Narges, Thompson, M

Journal:

The Journal of Infectious Diseases

Year:

2020

File:

PDF, 743 KB

2020

32

Using homology relations within a database markedly boosts protein sequence similarity search

Tong, Jing, Sadreyev, Ruslan I., Pei, Jimin, Kinch, Lisa N., Grishin, Nick V.

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.04 MB

english, 2015

33

A FAK/HDAC5 signaling axis controls osteocyte mechanotransduction

Sato, Tadatoshi, Verma, Shiv, Andrade, Christian D. Castro, Omeara, Maureen, Campbell, Nia, Wang, Jialiang S., Cetinbas, Murat, Lang, Audrey, Ausk, Brandon J., Brooks, Daniel J., Sadreyev, Ruslan I.,

Journal:

Nature Communications

Year:

2020

File:

PDF, 3.77 MB

2020

34

CASP5 assessment of fold recognition target predictions

Lisa N. Kinch, James O. Wrabl, S. Sri Krishna, Indraneel Majumdar, Ruslan I. Sadreyev, Yuan Qi, Jimin Pei, Hua Cheng, Nick V. Grishin

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 1.04 MB

english, 2003

35

Discrete–continuous duality of protein structure space

Ruslan I Sadreyev, Bong-Hyun Kim, Nick V Grishin

Journal:

Current Opinion in Structural Biology

Year:

2009

Language:

english

File:

PDF, 1.83 MB

english, 2009

36

Profile–profile comparisons by COMPASS predict intricate homologies between protein families

Ruslan I. Sadreyev, David Baker, Nick V. Grishin

Journal:

Protein Science

Year:

2003

Language:

english

File:

PDF, 1.02 MB

english, 2003

37

Considering scores between unrelated proteins in the search database improves profile comparison

Ruslan I Sadreyev, Yong Wang, Nick V Grishin

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.21 MB

english, 2009

38

Estimates of statistical significance for comparison of individual positions in multiple sequence alignments

Ruslan I Sadreyev, Nick V Grishin

Journal:

BMC Bioinformatics

Year:

2004

Language:

english

File:

PDF, 1.05 MB

english, 2004

39

Polycomb Repressive Complex 2 Methylates Elongin A to Regulate Transcription

Ardehali, M. Behfar, Anselmo, Anthony, Cochrane, Jesse C., Kundu, Sharmistha, Sadreyev, Ruslan I., Kingston, Robert E.

Journal:

Year:

2017

Language:

english

File:

PDF, 5.18 MB

english, 2017

40

Multi-â-Omicsâ Profiling in Patients With Quiescent Inflammatory Bowel Disease Identifies Biomarkers Predicting Relapse

Borren, Nienke Z, Plichta, Damian, Joshi, Amit D, Bonilla, Gracia, Sadreyev, Ruslan, Vlamakis, Hera, Xavier, Ramnik J, Ananthakrishnan, Ashwin N

Journal:

Inflammatory Bowel Diseases

Year:

2020

File:

PDF, 492 KB

2020

41

T H 17 Cytokine Responses in Lyme Disease Correlate with Borreliaburgdorferi Antibodies During Early Infection in Patients with Erythema Migrans and with Autoantibodies Late in the Illness in Patients with Antibiotic-Refractory Lyme Arthritis

Strle, Klemen, Sulka, Katherine B., Pianta, Annalisa, Crowley, Jameson T., Arvikar, Sheila L., Anselmo, Anthony, Sadreyev, Ruslan, Steere, Allen C.

Journal:

Clinical Infectious Diseases

Year:

2017

Language:

english

File:

PDF, 1.37 MB

english, 2017

42

Genome-wide analysis of differentially expressed miRNA in PLX4720-resistant and parental human thyroid cancer cell lines

Varmeh, Shohreh, Borre, Pierre Vanden, Gunda, Viswanath, Brauner, Eran, Holm, Tammy, Wang, Yangun, Sadreyev, Ruslan Ilyasovich, Parangi, Sareh

Journal:

Year:

2015

Language:

english

File:

PDF, 1.65 MB

english, 2015

43

Whole Genome Next-Generation Sequencing Mutation Identification in Pseudomonas aeruginosa

Cetinbas, Murat, Yu, Shen, Sadreyev, Ruslan I.

Journal:

Current Protocols in Molecular Biology

Year:

2018

Language:

english

File:

PDF, 177 KB

english, 2018

44

The Long Noncoding RNAs NEAT1 and MALAT1 Bind Active Chromatin Sites

West, Jason A., Davis, Christopher P., Sunwoo, Hongjae, Simon, Matthew D., Sadreyev, Ruslan I., Wang, Peggy I., Tolstorukov, Michael Y., Kingston, Robert E.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.62 MB

english, 2014

45

Effects of glutamate agonists on the isolated neurons from the locomotor network of the mollusc Clione limacina

Sadreyev, Ruslan I., Panchin, Yuri V.

Journal:

Year:

2002

Language:

english

File:

PDF, 188 KB

english, 2002

46

Exploring dynamics of protein structure determination and homology-based prediction to estimate the number of superfamilies and folds

Ruslan I Sadreyev, Nick V Grishin

Journal:

BMC Structural Biology

Year:

2006

Language:

english

File:

PDF, 1.40 MB

english, 2006

47

COMPASS: A Tool for Comparison of Multiple Protein Alignments with Assessment of Statistical Significance

Ruslan Sadreyev, Nick Grishin

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 2.99 MB

english, 2003

48

The surveillance of pre-mRNA splicing is an early step in C. elegans RNAi of endogenous genes

Newman, Martin A., Ji, Fei, Fischer, Sylvia E.J., Anselmo, Anthony, Sadreyev, Ruslan I., Ruvkun, Gary

Journal:

Genes & Development

Year:

2018

Language:

english

File:

PDF, 1.92 MB

english, 2018

49

HELZ2 Is an IFN Effector Mediating Suppression of Dengue Virus

Fusco, Dahlene N., Pratt, Henry, Kandilas, Stephen, Cheon, Scarlett Se Yun, Lin, Wenyu, Cronkite, D. Alex, Basavappa, Megha, Jeffrey, Kate L., Anselmo, Anthony, Sadreyev, Ruslan, Yapp, Clarence, Shi,

Journal:

Frontiers in Microbiology

Year:

2017

Language:

english

File:

PDF, 2.67 MB

english, 2017

50

Amyloid-Î²42/40 ratio drives tau pathology in 3D human neural cell culture models of Alzheimerâs disease

Kwak, Sang Su, Washicosky, Kevin J., Brand, Emma, von Maydell, Djuna, Aronson, Jenna, Kim, Susan, Capen, Diane E., Cetinbas, Murat, Sadreyev, Ruslan, Ning, Shen, Bylykbashi, Enjana, Xia, Weiming, Wagn

Journal:

Nature Communications

Year:

2020

Language:

english

File:

PDF, 5.74 MB

english, 2020

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